Chapter 5

Circulation modelling


CHAPTER
COORDINATORS

Stefania Ciliberti
CHAPTER
AUTHORS

Nadia Ayoub, Jérôme Chanut, Mauro Cirano13, Anne Delamarche, Pierre De Mey-Frémaux, Marie Drevillon, Yann Drillet, Helene Hewitt, Simona Masina, Clemente Tanajura, Vassilios Vervatis, and Liying Wan

5.1 General introduction to circulation models

5.1.1 Objective, applications and beneficiaries

The main objective of any OOFS is to provide users with the best reliable and easy access information available on the state of the ocean in near real-time. The service is meant for any user, and especially downstream service providers who use the information as an input to their own value added services.

A forecasting system relies on a numerical ocean model and, in many cases, on a data assimilation component able to assimilate the available observations and provide a complete dataset that can be used as initial conditions by the ocean circulation model. The availability of relevant observations is crucial to the success of an OOFS and the development of models and numerical techniques, along with data assimilation schemes that combine all the information taking into account the uncertainties of the observations and models.

The circulation modelling component represents one of the main cores of operational marine monitoring and forecasting systems: it provides an overall description of ocean physical essential variables (i.e. temperature, salinity, currents, sea surface height, etc.) for ocean predictions and for supporting climate studies. Ocean models are able to describe the sea state from global to coastal scales and to predict its variability and evolution in time (from short to mid-term to longterm). This is done by numerically solving a set of partial differential equations, based on an approximated version of the Navier-Stokes equations.

At the beginning of the XX century, Bjerknes (1914) described a practical method that could solve the mathematical dynamic and thermodynamic equations at least for a finite amount of time. He defined two factors that were necessary to make predictions a reality: (1) knowledge of the initial conditions as accurately as possible, and (2) the development of an accurate predictive model. The latter consisted of discretizing the equations and using numerical methods to solve for the time derivative. Based on this approach, the first successful meteorological forecast became operational at the end of the 1960s, while ocean forecasting began in the 1980s; a joint venture between Harvard University and the Naval Postgraduate School in Monterey, both in the United States, completed the first successful forecast of ocean mesoscales in a limited ocean area (see Pinardi et al., 2017, for an overview of the ocean prediction science). Earlier examples of wave forecasting during the second World War responded to the need to know the sea state during landing operations (O'Brien and Johnson, 1947).

During the last decades of the 20th century and the first decades of the 21st century, ocean forecasting has become an operational activity and, thanks to the increase of computing power, today we are able to numerically integrate the governing equations at very high resolution in space and time, to study multi-scale ocean processes, physical properties and their impacts on the climate, and human activities affecting the environment. In modern ocean prediction, stochastic approaches and ensemble estimates complement deterministic solutions, accounting for the different sources of uncertainties (e.g. errors in the initial conditions, in the forcing functions, in the physics of the numerical model, and in the bathymetry) that unavoidably affects the final solution and tends to increase over the forecast period. 

To improve the quality of predictions, data assimilation and ensemble techniques are widely used, and their primary scope is to rigorously and systematically combine available observations (in situ and satellite) with numerical ocean models to provide the best estimate of the forecasting cycle. However, in case of very high-resolution nested models and when observation availability is limited, operational systems do not use a data assimilation procedure. When possible, an OOFS system needs to retrieve data observations from a wide variety of observing platforms and systems over the domain of interest for prediction. Satellite based observing systems provide a large source of observational data for an OOFS as well.

An OOFS needs to access information from a numerical weather prediction system in order to provide surface boundary forcing information. The OOFS will also require information on other parameters that influence the ocean such as river outflows, etc. Depending on the domain of interest, the OOFS may also require information about sea ice (see Section 4.2 for the input data and Chapter 6 for understanding sea ice modelling basics). Observations are also used to provide a quantitative understanding of the capacity of the ocean model to make predictions by means of validation and calibration techniques and, consequently, to measure and monitor the accuracy of the forecasting product (see Section 4.5). Routine validation and verification information will tell the OOFS operators when a model is not performing well. The errors identified through validation and verification can be used to set priorities for further development of the OOFS. Despite the enormous improvements reached nowadays by operational forecasting systems ranging from global to coastal scales, much research is still needed to advance in ocean prediction. Developments include access to additional innovative autonomous multi-scale observing technologies observations, both remote and in situ (Le Traon et al., 2019), to new model developments (Fox-Kemper et al., 2019), up to next-generation computational methods and data assimilation schemes supported by the recently expanding applications of machine learning techniques in this field (De MeyFrémaux et al., 2019).

The ultimate purpose for operating an OOFS is the production, preparation, and delivery of operational ocean forecasts to users in forms that meet their needs. There is a growing list of users relying on the products and services from operational ocean forecasting systems. Ocean predictions will continue to produce an increasing number of marine applications and services: e.g. for maritime safety, marine resources, coastal and marine environment (Chapter 11). This is because the new systems allow informed management and emergency decisions to be made based on physical knowledge resolved at unprecedented space and time resolution, with known quality and accuracy. 

The emergence of operational organisations for delivering real-time forecasts and analyses will encourage the development of value-added products, including forecasts for extreme weather driven events (such as storm surges), pollution, oil spills, acoustic properties (e.g. the speed of sound), sea ice, ecosystem management, safe offshore activities, search and rescue operations, optimal energy extraction, and maritime safety and transport. In addition, ocean forecast products and services can also be providers of information for aquaculture, fishery research, and regional fishery organisations, contributing to the protection and sustainable management of living marine resources. Availability of predictions on the ocean helps to limit damages in the case of floods, storm surges, heat waves and other dangers associated with sea conditions. Furthermore, detailed and accurate forecasts are also useful to assist decision making to plan long-term strategies aiming at managing the risks associated with the impacts of climate change on the sea and coasts, such as sea level rise and marine heat waves. 

A predicted ocean where society has the capacity to understand current and future ocean conditions is one of the proposed seven outcomes of the United Nations Decade of Ocean Sciences for Sustainable Development. 

Scope of this chapter is to present all elements that make an OOFS and provides a detailed understanding of the main circulation modelling components. For each component, a comprehensive description is provided in dedicated chapter subsections, including the presentation of some state-of-the-art examples of ocean models currently working in operational frameworks. In addition, basic concepts of data assimilation systems and validation strategies will be presented as well, since an essential part of operating a model is to conduct the necessary validation and verification procedures to maintain a continuous quality control of the system outputs.

5.1.2 Circulation Physics

The physical processes, properties and circulation of the ocean are described numerically by the approximated Navier-Stokes equations (details in Section 5.4.1). The equations allow the spatial and temporal distribution of the temperature, salinity, density, pressure, and currents to be described. Numerical ocean models are the building block of operational oceanography and fundamental for near real time to seasonal to decadal forecasts and climate projections. In operational oceanography, they are used alongside data assimilation techniques to accurately represent the state of the ocean at a particular point in time and space, and to produce the initial condition of the forecasting system.

The governing equations for a real fluid are the Navier-Stokes equations, together with conservation of salt and heat and an equation of state; these equations support fast acoustic modes and involve nonlinearities in many terms that make their solution both difficult and expensive. A series of approximations are made to simplify and yield the “primitive equations”, which are the basis of most general circulation models. The assumptions that are made in ocean models are described in Section 5.4.

Ocean circulation models aim to represent key processes. These include: 1) transport of heat by the ocean; 2) the effect of evaporation, precipitation and runoff on ocean salinity and density; and 3) the role of ocean currents which, along with wind waves and tides, drive ocean mixing and water mass transformation. Ocean circulation models discretize the governing equations on a horizontal and vertical grid (Section 5.4 expands on this). The details of whether processes can be explicitly resolved in models or they must be parameterised depend on the resolution of the grid used to solve the approximate numerical system.

Figure 3.4 (see Chapter 3) shows the order of magnitude of spatial and temporal scales of specific ocean processes. If the model resolves scales of100 km, ocean models should be able to resolve Kelvin and Rossby waves; indeed, the representation of Equatorial dynamics has been shown to be important for forecasting the evolution of El Nino on seasonal timescales (Latif et al., 1994). On shorter timescales but with similar spatial scales, surface tides are key processes to represent. Moving to spatial scales of ~10 km to 100 km, the ocean mesoscale can start to be represented; this scale includes boundary currents and mesoscale eddies (Hewitt et al., 2020). At even finer scales, coastal upwelling, internal tides, and internal waves can be represented. Interactions with bathymetry can be important at the scale of the bathymetry. For example, choke points can determine the exchange between the deep ocean and inland seas, such as the Gibraltar Strait. Horizontal resolution choices are discussed further in Section 5.4.

While a primary consideration is the horizontal scales (Figure 3.4), the choice of vertical resolution and coordinate is also an important consideration. These choices are discussed further in Section 5.4, along with the numerical methods that are employed to solve the equations and some of the parameterisation choices to be made. 

The ocean has strong links to other aspects of the Earth system, such as sea ice, which is particularly important for modulating temperature and salinity at high latitudes. Global ocean models include a sea ice component. State-of-the-art sea ice models represent the ice thermodynamics including meltponds and the ice dynamics, with a representation of the ice rheology. Many sea ice models also capture the variations in ice thickness or ice age within a typical ocean grid box. Current status of sea ice modelling and the applicability of models for operational forecasting is discussed in Hunke et al. (2020). 

This chapter provides complementary information on the way to set an OOFS, which core is the circulation model. Section 5.3 will provide a list of input data needed for setting up an ocean model, from static datasets such the bathymetry to operational products such atmospheric forcing, to other OOFS for the provisioning of initial/boundary conditions in case of regional/coastal models, to observations used for assimilation and validation. Section 5.4 focuses on the mathematical formulation of the primitive equations, providing some basic information to numerical methods for discretization and numerical integration of such equations. Section 5.5 is devoted to presenting the basic mathematics for the data assimilation schemes commonly used in global and regional OOFS. Section 5.6 deals with ensemble modelling and, finally, Sections 5.7 and 5.8 provide major details on the validation approaches and the OOFS output. The last part of this chapter provides an inventory of OOFS, including multiyear systems, operating at international level, from global to coastal scale.

References

Balmaseda, M. A., Mogensen, K., and Weaver, A.T. (2013). Evaluation of the ECMWF ocean reanalysis system ORAS4. Quarterly Journal of the Royal Meteorological Society, 139, 1132-1161, https://doi.org/10.1002/qj.2063 

Balmaseda, M.A., Hernandez, F., Storto , A., Palmer, M.D., Alves, O., Shi, L., Smith, G.C. Toyoda, T., Valdivieso, M., Barnier, B., Behringer, D., Boyer, T., Chang, Y-S., Chepurin, G.A., Ferry, N., Forget, G., Fujii, Y., Good, S., Guinehut, S., Haines, K., Ishikawa, Y., Keeley, S., Köhl, A., Lee, T., Martin, M.J, Masina, S., Masuda, S., Meyssignac, B., Mogensen, K., Parent, L., Peterson, K.A., Tang, Y.M., Yin, Y., Vernieres, G., Wang, X., Waters, J., Wedd, R., Wang, O., Xue, Y., Chevallier, M., Lemieux, J.F., Dupont, F., Kuragano, T., Kamachi, M., Awaji, T., Caltabiano, A., Wilmer-Becker, K., Gaillard, F. (2015). The Ocean Reanalyses Intercomparison Project (ORA-IP). Journal of Operational Oceanography, 8(sup1), s80-s97, https://doi.org/10.1080/1755876X.2015.1022329

Barth, A., Alvera-Azcárate, A., Beckers, J.M., Weisberg, R. H., Vandenbulcke, L., Lenartz, F., and Rixen, M. (2009). Dynamically constrained ensemble perturbations–application to tides on the West Florida Shelf. Ocean Science, 5, 259-270, https://doi.org/10.5194/os-5-259-2009 

Bell, M., Schiller, A., Le Traon, P-Y., Smith, N.R., Dombrowsky, E., Wilmer-Becker, K. (2015). An introduction to GODAE OceanView. Journal of Operational Oceanography, 8, 2-11, https://doi.org/10.1080/1755876X.2015.1022041 

Bennett, A.F. (1992). Inverse Methods in Physical Oceanography, Cambridge University Press, Cambridge, UK. 

Berner, J., G. Shutts, M. Leutbecher, and T. Palmer. (2009). A spectral stochastic kinetic energy backscatter scheme and its impact on flow-dependent predictability in the ECMWF ensemble prediction system. Journal of the Atmospheric Sciences, 66, 603-626, https://doi.org/10.1175/2008JAS2677.1 

Bessières, L., Leroux, S., Brankart, J.M., Molines, J.M., Moine, M.P., Bouttier, P.A., Penduff, T., Terray, L., Barnier, B., Sérazin, G. (2017). Development of a probabilistic ocean modelling system based on NEMO 3.5: Application at eddying resolution. Geoscientific Model Development, 10, 1091-1106, https://doi.org/10.5194/gmd-10-1091-2017

Bjerknes, V. (1914). Meteorology as an exact science. Monthly Weather Review, 42(1), 11-14, https://doi.org/10.1175/1520-0493(1914)42<11:MAAES>2.0.CO;2 

Blayo, E., and Debreu, L. (1999). Adaptive mesh refinement for finite-difference ocean models: first experiments. Journal of Physical Oceanography, 29(6), 1239-1250, https://doi.org/10.1175/1520-0485(1999)029%3C1239:AMRFFD%3E2.0.CO;2

Blayo, E., and Debreu, L. (2005). Revisiting open boundary conditions from the point of view of characteristic variables. Ocean Modelling, 9(3), 231-252, https://doi.org/10.1016/j.ocemod.2004.07.001 

Bouttier, F., and Courtier, P. (2002). Data assimilation concepts and methods, March 1999. ECMWF Education material, 59 pp., https://www.ecmwf.int/en/elibrary/16928-data-assimilation-concepts-and-methods 5.10.

Brankart, J.-M., (2013). Impact of uncertainties in the horizontal density gradient upon low resolution global ocean modelling. Ocean Modelling, 66, 64-76, http://dx.doi.org/10.1016/j.ocemod.2013.02.004 

Brankart, J.-M., Candille, G., Garnier, F., Calone, C., Melet, A., Bouttier, P.-A., Brasseur, P., Verron, J., (2015). A generic approach to explicit simulation of uncertainty in the NEMO ocean model. Geoscientific Model Development, 8, 1285-1297, https://doi.org/10.5194/gmd-8-1285-2015 

Brassington, G.B., Warren, G., Smith, N., Schiller, A., Oke, P.R. (2005). BLUElink> Progress on operational ocean prediction for Australia. Bulletin of the Australian Meteorological and Oceanographic Society, Vol.18 p. 104. 

Buizza, R., Miller, M., Palmer, T.N. (1999). Stochastic representation of model uncertainties in the ECMWF ensemble prediction system. Quarterly Journal of the Royal Meteorological Society, 125, 2887-2908, http://dx.doi.org/10.1002/qj.49712556006 

Candille, G., and Talagrand, O. (2005). Evaluation of probabilistic prediction systems for a scalar variable. Quarterly Journal of the Royal Meteorological Society, 131, 2131-2150, https://doi.org/10.1256/qj.04.71 

Charria, G., Lamouroux, J., De Mey, P. (2016). Optimizing observational networks combining gliders, moored buoys and FerryBox in the Bay of Biscay and English Channel. J. Mar. Syst., 162, 112-125. http://dx.doi.org/10.1016/j.jmarsys.2016.04.003 

Chassignet, E. P., Hurlburt, H. E., Smedstad, O. M., Halliwell, G. R., Hogan, P. J., Wallcraft, A. J., and Bleck, R. (2006). Ocean prediction with the hybrid coordinate ocean model (HYCOM). In “Ocean weather forecasting”, 413-426, Springer, Dordrecht, doi:10.1007/1-4020-4028-8_16 

Chelton, D. B., DeSzoeke, R. A., Schlax, M. G., El Naggar, K., and Siwertz, N. (1998). Geographical variability of the first baroclinic Rossby radius of deformation. Journal of Physical Oceanography, 28(3), 433-460, https://doi.org/10.1175/1520-0485(1998)028<0433:GVOTFB>2.0.CO;2 

Cheng, S., Aydoğdu, A., Rampal, P., Carrassi, A., Bertino, L. (2020). Probabilistic Forecasts of Sea Ice Trajectories in the Arctic: Impact of Uncertainties in Surface Wind and Ice Cohesion. Oceans, 1, 326- 342, https://doi.org/10.3390/oceans1040022 

Ciavatta, S., Torres, R., Martinez-Vicente, V., Smyth, T., Dall'Olmo, G., Polimene, L., and Allen, J. I. (2014). Assimilation of remotely-sensed optical properties to improve marine biogeochemistry modelling. Progresses in Oceanography, 127, 74-95, https://doi.org/10.1016/j.pocean.2014.06.002 

Crosnier, L., and Le Provost, C. (2007). Inter-comparing five forecast operational systems in the North Atlantic and Mediterranean basins: The MERSEA-strand1 Methodology. Journal of Marine Systems, 65(1-4), 354-375, https://doi.org/10.1016/j.jmarsys.2005.01.003 

Cummings, J. A. (2005). Operational multivariate ocean data assimilation. Quarterly Journal of the Royal Meteorological Society, 131(613), 3583-3604, https://doi.org/10.1256/qj.05.105 

Cummings, J.A., and Smedstad, O.M. (2013). Variational data analysis for the global ocean. In: S.K. Park and L. Xu (Eds.), Data Assimilation for Atmospheric, Oceanic and Hydrologic Applications Vol. II., doi:10.1007/978-3-642-35088-7_13, Springer-Verlag Berlin Heidelberg. 

Daley, R. (1991). Atmospheric Data Analysis. Cambridge University Press. 457 pp. 

Danilov, S., Kivman, G., and Schröter, J. (2004). A finite-element ocean model: principles and evaluation. Ocean Modelling, 6(2), 125-150, https://doi.org/10.1016/S1463-5003(02)00063-X 

Debreu, L., Marchesiello, P., Penven, P., and Cambon, G. (2012). Two-way nesting in split-explicit ocean models: Algorithms, implementation and validation. Ocean Modelling, 49, 1-21, https://doi.org/10.1016/j.ocemod.2012.03.003 

Debreu, L., Vouland, C., and Blayo, E. (2008). AGRIF: Adaptive grid refinement in Fortran. Computers & Geosciences, 34(1), 8-13, https://doi.org/10.1016/j.cageo.2007.01.009 

De Mey-Frémaux and the Groupe MERCATOR Assimilation (1998). Scientific Feasibility of Data Assimilation in the MERCATOR Project. Technical Report, doi: https://doi.org/10.5281/zenodo.3677206 

De Mey P., Craig P., Kindle J., Ishikawa Y., Proctor R., Thompson K., Zhu J., and contributors (2007). Towards the assessment and demonstration of the value of GODAE results for coastal and shelf seas and forecasting systems, 2nd ed. GODAE White Paper, GODAE Coastal and Shelf Seas Working Group (CSSWG), 79 pp. Available online at: http://www.godae.org/CSSWG.html 

De Mey-Frémaux, P., Ayoub, N., Barth, A., Brewin, R., Charria, G., Campuzano, F., Ciavatta, S., Cirano, M., Edwards, C.A., Federico, I., Gao, S., Garcia-Hermosa, I., Garcia-Sotillo, M., Hewitt, H., Hole, L.R., Holt, J., King, R., Kourafalou, V., Lu, Y., Mourre, B., Pascual, A., Staneva, J., Stanev, E.V., Wang, H. and Zhu X. (2019). Model-Observations Synergy in the Coastal Ocean. Frontiers in Marine Science, 6:436, https://doi.org/10.3389/fmars.2019.00436 

Desroziers, G., Berre, L., Chapnik, B., Poli, P. (2005). Diagnosis of observation, background and analysis-error statistics in observation space. Quarterly Journal of the Royal Meteorological Society, 131, 3385-3396, http://dx.doi.org/10.1256/qj.05.108 

Dyke, P. (2016). Modelling Coastal and Marine Processes. 2nd Edition, Imperial College Press, https://doi.org/10.1142/p1028 

Ebert, E. E. (2009). Neighborhood verification - a strategy for rewarding close forecasts. Weather and Forecasting, 24(6), 1498-1510, https://doi.org/10.1175/2009WAF2222251.1 

Evensen, G. (2003). The ensemble Kalman filter: Theoretical formulation and practical implementation. Ocean dynamics, 53, 343-367, https://doi.org/10.1007/s10236-003-0036-9 

Fox-Kemper, B., Adcroft, A., Böning, C.W., Chassignet, E.P., Curchitser, E., Danabasoglu, G., Eden, C., England, M.H., Gerdes, R., Greatbatch, R.J., Griffies, S.M., Hallberg, R.W., Hanert, E., Heimbach, P., Hewitt, H.T., Hill, C.N., Komuro, Y., Legg, S., Le Sommer, J., Masina, S., Marsland, S.J., Penny, S.G., Qiao, F., Ringler, T.D., Treguier, A.M., Tsujino, H., Uotila, P., and Yeager, S.G. (2019). Challenges and Prospects in Ocean Circulation Models. Frontiers in Marine Science, 6:65, https://doi.org/10.3389/fmars.2019.00065

Gerya, T. (2019). Introduction to Numerical Geodynamic Modelling. 2nd edition, Cambridge University Press, https://doi.org/10.1017/9781316534243 

Ghantous, M., Ayoub, N., De Mey-Frémaux, P., Vervatis, V., Marsaleix, P. (2020). Ensemble downscaling of a regional ocean model. Ocean Modelling, 145, http://dx.doi.org/10.1016/j.ocemod.2019.101511 

Ghil, M., and Melanotte-Rizzoli, P. (1991). Data Assimilation in Meteorology and Oceanography. Advances in Geophysics, 33, 141-266, https://doi.org/10.1016/S0065-2687(08)60442-2 

Greenberg, D.A., Dupont, F., Lyard, F., Lynch, D., Werner, F. (2007). Resolution issues in numerical models of oceanic and coastal circulation. Continental Shelf. Research, 27(9), https://doi.org/10.1016/j.csr.2007.01.023

Griffies, S. M., Pacanowski, R. C., and Hallberg, R. W. (2000). Spurious diapycnal mixing associated with advection in a z-coordinate ocean model. Monthly Weather Review, 128, 538-564, https://doi.org/10.1175/1520-0493(2000)128<0538:SDMAWA>2.0.CO;2 

Griffies, S. M. (2006). Some ocean model fundamentals. In “Ocean Weather Forecasting”, Editoris: E. P. Chassignet and J. Verron, 19-73, Springer-Verlag, Dordrecht, The Netherlands, doi:10.1007/1-4020- 4028-8_2 

Hallberg, R. (2013). Using a resolution function to regulate parameterizations of oceanic mesoscale eddy effects. Ocean Modelling, 72, 92-103, https://doi.org/10.1016/j.ocemod.2013.08.007 

Hersbach H. (2000). Decomposition of the continuous ranked probability score for ensemble prediction systems. Weather and Forecasting, 15(5), 559-570, https://doi.org/10.1175/1520-0434(2000)015<0559:DOTCRP>2.0.CO;2 

Herzfeld, M., and Gillibrand, P.A. (2015). Active open boundary forcing using dual relaxation time-scales in downscaled ocean models. Ocean Modelling, 89, 71-83, https://doi.org/10.1016/j.ocemod.2015.02.004 

Hewitt, H.T., Roberts, M., Mathiot, P. et al. (2020). Resolving and Parameterising the Ocean Mesoscale in Earth System Models. Current Climate Change Reports, 6, 137-152, https://doi.org/10.1007/s40641-020-00164-w 

Hirsch, C. (2007). Numerical Computation of Internal and External Flows - The Fundamentals of Computational Fluid Dynamics. 2nd Edition, Butterworth-Heinemann. 

Hunke, E., Allard, R., Blain, P., Blockey, E., Feltham, D., Fichefet, T., Garric, G., Grumbine, R., Lemieux, J.-F., Rasmussen, T., Ribergaard, M., Roberts, A., Schweiger, A., Tietsche, S., Tremblay, B., Vancoppenolle, M., Zhang, J. (2020). Should Sea-Ice Modeling Tools Designed for Climate Research Be Used for Short-Term Forecasting? Current Climate Change Reports, 6, 121-136, https://doi.org/10.1007/s40641-020-00162-y 

Ide, K., Courtier, P., Ghil, M., and Lorenc, A. C. (1997). Unified notation for data assimilation: Operational, sequential and variational (Special Issue Data Assimilation in Meteorology and Oceanography: Theory and Practice). Journal of the Meteorological Society of Japan, Ser. II, 75(1B), 181-189, https://doi.org/10.2151/jmsj1965.75.1B_181 

Janssen, P.A.E.M., Abdalla, S., Hersbach, H., Bidlot, J.R. (2007). Error estimation of buoy, satellite, and model wave height data. Journal of Atmospheric and Oceanic Technology, 24(9), 1665-1677, https://doi.org/10.1175/JTECH2069.1 

Juricke, S., Lemke, P., Timmermann, R., Rackow, T. (2013). Effects of Stochastic Ice Strength Perturbation on Arctic Finite Element Sea Ice Modeling. Journal of Climate, American Meteorological Society, 26(11), 3785-3802, https://doi.org/10.1175/JCLI-D-12-00388.1 

Kantha, L. H., & Clayson, C. A. (2000). Numerical models of oceans and oceanic processes. Elsevier, 1-940, ISBN: 978-0-12-434068-8. 

Katavouta, A., Thompson, K.R. (2016). Downscaling ocean conditions with application to the Gulf of Maine, Scotian Shelf and adjacent deep ocean. Ocean Modelling,104, 54-72, https://doi.org/10.1016/j.ocemod.2016.05.007 

Lamouroux, J., Charria, G., Mey, P. De, Raynaud, S., Heyraud, C., Craneguy, P., Dumas, F., Le Hénaff, M. (2016). Objective assessment of the contribution of the RECOPESCA network to the monitoring of 3D coastal ocean variables in the Bay of Biscay and the English Channel. Ocean Dynamics, 66(4), 567- 588, http://dx.doi.org/10.1007/s10236-016-0938-y 

Latif, M., Barnett, T.P., Cane, M.A. et al. (1994). A review of ENSO prediction studies. Climate Dynamics, 9,167-179. CHAPTER 5. CIRCULATION MODELLING 120 

Le Traon, P. Y., Reppucci, A., Alvarez Fanjul, E., Aouf, L., Behrens, A., Belmonte, M., ... and Zacharioudaki, A. (2019). From observation to information and users: the Copernicus Marine Service perspective. Frontiers in Marine Science, 6, 234, https://doi.org/10.3389/fmars.2019.00234 

Lellouche, J.-M., Le Galloudec, O., Drévillon, M., Régnier, C., Greiner, E., Garric, G., Ferry, N., Desportes, C., Testut, C.-E., Bricaud, C., Bourdallé-Badie, R., Tranchant, B., Benkiran, M., Drillet, Y., Daudin, A., De Nicola, C. (2013). Evaluation of global monitoring and forecasting systems at Mercator Océan. Ocean Science, 9, 57-81, 2013, https://doi.org/10.5194/os-9-57-2013

Lima, L.N., Pezzi, L.P., Penny, S.G., and Tanajura, C.A.S., (2019). An investigation of ocean model uncertainties through ensemble forecast experiments in the Southwest Atlantic Ocean. Journal of Geophysical Research: Oceans, 124, 432-452. https://doi.org/10.1029/2018JC013919

Lumpkin, R., and Speer, K. (2007). Global Ocean Meridional Overturning. Journal of Physical Oceanography, 37(10), 2550-2562, https://doi.org/10.1175/JPO3130.1

Lyard, F. H., Allain, D. J., Cancet, M., Carrere, L., and Picot, N. (2021). Fes2014 global ocean tides atlas: design and performances. Ocean Science, 17, 615-649, https://doi.org/10.5194/os-17-615-2021

Madec, G., and NEMO System Team, (2022). “NEMO ocean engine”, Scientific Notes of Climate Modelling Center (27) – ISSN 1288-1619, Institut Pierre-Simon Laplace (IPSL), doi:10.5281/zenodo.6334656

Martin, M. J., Hines, A., and Bell, M. J. (2007). Data assimilation in the FOAM operational short-range ocean forecasting system: a description of the scheme and its impact. Quarterly Journal of the Royal Meteorological Society, 133(625), 981-995, https://doi.org/10.1002/qj.74

Martin, M. J., Balmaseda, M., Bertino, L., Brasseur, P., Brassington, G., Cummings, J., ... and Weaver, A. T. (2015). Status and future of data assimilation in operational oceanography. Journal of Operational Oceanography, 8(sup1), s28-s48, https://doi.org/10.1080/1755876X.2015.1022055

Mason, E., Pascual, A., and McWilliams, J.C. (2014). A new sea surface height–based code for oceanic mesoscale eddy tracking. Journal of Atmospheric and Oceanic Technology, 31(5), 1181-1188, https://doi.org/10.1175/JTECH-D-14-00019.1

Mazloff, M. R., Cornuelle, B., Gille, S. T., Wang, J. (2020). The importance of remote forcing for regional modeling of internal waves. Journal of Geophysical Research: Oceans, 125, e2019JC015623, https://doi.org/10.1029/2019JC015623

Menard, R., and Daley, R. (1996). The application of Kalman smoother theory to the estimation of 4DVAR error statistics. Tellus A: Dynamic Meteorology and Oceanography, 48, 221-237, https://doi.org/10.3402/tellusa.v48i2.12056

Mittermaier, M., Roberts, N., and Thompson, S.A. (2013). A long-term assessment of precipitation forecast skill using the Fractions Skill Score. Meteorological Applications, 20(2),176-186, https://doi.org/10.1002/met.296

Mittermaier, M., North, R., Maksymczuk, J., Pequignet, C., & Ford, D. (2021). Using feature-based verification methods to explore the spatial and temporal characteristics of forecasts of the 2019 Chlorophyll-a bloom season over the European North-West Shelf. Ocean Science,17,1527-1543, https://doi.org/10.5194/os-17-1527-2021

Mogensen, K, Balmaseda, A., Alonso, W.M. (2012). The NEMOVAR ocean data assimilation system as implemented in the ECMWF ocean analysis for System 4. Technical memorandum, doi:10.21957/x5y9yrtm

O'Brien, M.P., and Johnson, J.W. (1947). Wartime research on waves and surf. The Military Engineer, 39, pp. 239-242.

Oke, P. R., Brassington, G. B., Griffin, D. A., and Schiller, A. (2008). The Bluelink ocean data assimilation system (BODAS). Ocean Modelling, 21(1-2), 46-70, https://doi.org/10.1016/j.ocemod.2007.11.002

Ollinaho, P., Lock, S., Leutbecher, M., Bechtold, P., Beljaars, A., Bozzo, A., Forbes, R.M., Haiden, T., Hogan, R.J., Sandu, I. (2017). Towards process-level representation of model uncertainties: stochastically perturbed parametrizations in the ECMWF ensemble. Quarterly Journal of the Royal Meteorological Society, 143, 408-422, http://dx.doi.org/10.1002/qj.2931

Palmer, T. (2018). The ECMWF ensemble prediction system: Looking back (more than) 25 years and projecting forward 25 years. Quarterly Journal of the Royal Meteorological Society, 145, 12-24, https://doi.org/10.1002/qj.3383

Penduff, T., Barnier, B., Terray, L., Sérazin, G., Gregorio, S., Brankart, J.-M., Moine, M.-P., Molines, J.-M., Brasseur, P. (2014). Ensembles of eddying ocean simulations for climate. In: CLIVAR Exchanges, 65(19), 26-29. Available at: https://www.clivar.org/sites/default/files/documents/exchanges65_0.pdf

Pham, D. T., Verron, J., and Roubaud, M.C. (1998). A singular evolutive Kalman filters for data assimilation in oceanography. Journal of Marine Systems, 16(3-4), 323-340, https://doi.org/10.1016/S0924-7963(97)00109-7

Pinardi, N., Lermusiaux, P.F.J., Brink, K.H., Preller, R. H. (2017). The Sea: The science of ocean predictions. Journal of Marine Research, 75(3), 101-102, https://www.researchgate.net/publication/319872390_The_Sea_The_Science_of_Ocean_Prediction

Quattrocchi, G., De Mey, P., Ayoub, N., Vervatis, V., Testut, C.-E., Reffray, G., Chanut, J., Drillet, Y., (2014). Characterisation of errors of a regional model of the bay of biscay in response to wind uncertainties: a first step toward a data assimilation system suitable for coastal sea domains. Journal of Operational Oceanography, 7(2), 25-34, https://doi.org/10.1080/1755876X.2014.11020156 

Ren, S., Zhu, X., Drevillon, M., Wang, H., Zhang, Y., Zu, Z., Li, A. (2021). Detection of SST Fronts from a High-Resolution Model and Its Preliminary Results in the South China Sea. Journal of Atmospheric and Oceanic Technology, 38(2), 387-403, https://doi.org/10.1175/JTECH-D-20-0118.1

Ryan, A. G., Regnier, C., Divakaran, P., Spindler, T., Mehra, A., Smith, G. C., et al. (2015). GODAE OceanView Class 4 forecast verification framework: global ocean inter-comparison. Journal of Operational Oceanography, 8(sup1), S112-S126, https://doi.org/10.1080/1755876X.2015.1022330

Sakov, P., Counillon, F., Bertino, L., Lisæter, K.A., Oke, P.R., Korablev, A., (2012). TOPAZ4: an ocean-sea ice data assimilation system for the north atlantic and arctic. Ocean Science, 8 (4), 633–656, http://dx.doi.org/10.5194/os-8-633-2012

Sandery, P.A., and Sakov, P. (2017). Ocean forecasting of mesoscale features can deteriorate by increasing model resolution towards the submesoscale. Nature Communications, 8,1566, http://dx.doi.org/10.1038/s41467-017-01595-0

Santana-Falcón, Y., Brasseur, P., Brankart, J.M., and Garnier, F. (2020). Assimilation of chlorophyll data into a stochastic ensemble simulation for the North Atlantic Ocean. Ocean Science, 16, 1297-1315, https://doi.org/10.5194/os-16-1297-2020

Sasaki, Y. (1970). Some basic formalisms in numerical variational analysis. Monthly Weather Review, 98(12), 875-883.

Sein, D.V., Koldunov, N.K., Danilov, S., Wang,Q., Sidorenko, D., Fast, I., Rackow, T., Cabos, W., Jung, T. (2017). Ocean Modelling on a Mesh With Resolution Following the Local Rossby Radius. Journal of Advances in Modelling Earth Systems, 9:7, 2601-2614, https://doi.org/10.1002/2017MS001099

Simon, E., and Bertino, L. (2009). Application of the Gaussian anamorphosis to assimilation in a 3-D coupled physical-ecosystem model of the North Atlantic with the EnKF: a twin experiment. Ocean Science, 5, 495-510, 2009, https://doi.org/10.5194/os-5-495-2009

Smith, G.M., Roy, F., Reszka, M., Surcel Colan, D., He, Z., Deacu, D., Belanger, J.-M., Skachko,S., Liu, Y., Dupont, F., Lemieux, J.-F., Beaudoin, C., Tranchant, B., Drévillon, M., Garric, G., Testut, G.-E., Lellouche, J.-M., Pellerin, P., Ritchie, H., Lu, Y., Davidson, F., Buehner, M., Caya, A., Lajoie, M. (2016). Sea ice forecast verification in the Canadian Global Ice Ocean Prediction System. Quarterly Journal of the Royal Meteorological Society, 142(695), 659-671, https://doi.org/10.1002/qj.2555

Storto, A., and Andriopoulos, P., (2021). A new stochastic ocean physics package and its application to hybrid-covariance data assimilation. Quarterly Journal of the Royal Meteorological Society, 147, 1691-1725, https://doi.org/10.1002/qj.3990

Tchonang, B.C., Benkiran, M., Le Traon P.-Y., Van Gennip, S.J., Lellocuhe, J.M., Ruggiero, G. (2021). Assessing the impact of the assimilation of SWOT observations in a global high-resolution analysis and forecasting system. Part 2: Results. Frontiers in Marine Science, 8:687414, https://doi.org/10.3389/fmars.2021.687414

Thacker, W.C., Srinivasan, A., Iskandarani, M., Knio, O.M., Le Hénaff, M., (2012). Propagating boundary uncertainties using polynomial expansions. Ocean Modelling, 43-44, 52-63, http://dx.doi.org/10.1016/j.ocemod.2011.11.011

Thoppil, P.G., Frolov, S., Rowley, C.D. et al. (2021). Ensemble forecasting greatly expands the prediction horizon for ocean mesoscale variability. Communications Earth & Environment, 2, 89, https://doi.org/10.1038/s43247-021-00151-5

Toublanc, F., Ayoub, N.K., Lyard, F., Marsaleix, P., Allain, D.J., 2018. Tidal downscaling from the open ocean to the coast: a new approach applied to the Bay of Biscay. Ocean Modelling, 214, 16-32. http://dx.doi.org/10.1016/j.ocemod.2018.02.001

Usui, N., Ishizaki, S., Fujii, Y., Tsujino, H., Yasuda, T., Kamachi, M. (2006). Meteorological Research Institute multivariate ocean variational estimation (MOVE) system: Some early results. Advances in Space Research, 37(4), 806-822, https://doi.org/10.1016/j.asr.2005.09.022

Vervatis, V. D., Testut, C.E.. De Mey, P., Ayoub, N., Chanut, J., Quattrocchi, G. (2016). Data assimilative twin-experiment in a high-resolution Bay of Biscay configuration: 4D EnOI based on stochastic modelling of the wind forcing. Ocean Modelling, 100, 1-19, https://doi.org/10.1016/j.ocemod.2016.01.003

Vervatis, V.D., De Mey-Frémaux, P., Ayoub, N., Karagiorgos, J., Ciavatta, S., Brewin, R., Sofianos, S., (2021a). Assessment of a regional physical-biogeochemical stochastic ocean model. Part 2: empirical consistency. Ocean Modelling, 160, 101770, http://dx.doi.org/10.1016/j.ocemod.2021.101770

Vervatis, V. D., De Mey-Frémaux, P., Ayoub, N., Karagiorgos, J., Ghantous, M., Kailas, M., Testut, C.-E., and Sofianos, S., (2021b). Assessment of a regional physical-biogeochemical stochastic ocean model. Part 1: ensemble generation. Ocean Modelling, 160, 101781, https://doi.org/10.1016/j.ocemod.2021.101781

Waters, J., Lea, D.L., Martin, M.J., Mirouze, I., Weaver, A., While, J. (2014). Implementing a variational data assimilation system in an operational 1/4 degree global ocean model. Quarterly Journal of the Royal Meteorological Society, 141(687), 333-349, https://doi.org/10.1002/qj.2388

Zaron, E.D. (2011). Introduction to Ocean Data Assimilation. In: Schiller, A., Brassington, G. (eds) “Operational Oceanography in the 21st Century”. Springer, Dordrecht. https://doi.org/10.1007/978-94-007-0332-2_13

To start contributing, sharing knowledge and editing the WIKI, please login